Preprocess data
Usage
standardize_data(
df,
plate_id_col = "PLATE_ID",
id_col = "SAMPLE_ID",
result_col = "RESULT",
dilution_fct_col = "DILUTION_FACTORS",
antitoxin_label = "Anti_toxin",
negative_col = "^NEGATIVE_*"
)Arguments
- df
- data.frame with columns for plate id, sample id, result, dilution factor, and (optionally) negative controls
- plate_id_col
- name of the column storing plates id
- id_col
- name of the column storing sample id
- result_col
- name of the column storing result
- dilution_fct_col
- name of the column storing dilution factors
- antitoxin_label
- how antitoxin is label in the sample id column
- negative_col
- regex for columns for negative controls, assumed to be a label followed by the dilution factor (e.g. NEGATIVE_50, NEGATIVE_100)